J3_8BPO_021
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 8BPO|1|A1|C|2470, 8BPO|1|A1|A|2472, 8BPO|1|A1|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|A|2451
8BPO|1|A1|G|2452
8BPO|1|A1|A|2453
8BPO|1|A1|U|2454
8BPO|1|A1|G|2455
8BPO|1|A1|G|2456
*
8BPO|1|A1|C|2465
8BPO|1|A1|G|2466
8BPO|1|A1|U|2467
8BPO|1|A1|U|2468
8BPO|1|A1|C|2469
8BPO|1|A1|C|2470
8BPO|1|A1|G|2471
8BPO|1|A1|A|2472
8BPO|1|A1|A|2473
8BPO|1|A1|G|2474
8BPO|1|A1|G|2475
8BPO|1|A1|G|2476
*
8BPO|1|A1|C|2501
8BPO|1|A1|A|2502
8BPO|1|A1|G|2503
8BPO|1|A1|C|2504
8BPO|1|A1|C|2505
8BPO|1|A1|G|2506
8BPO|1|A1|A|2507
8BPO|1|A1|U|2508
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L8
- Chain C1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G2
- 60S ribosomal protein L7a
- Chain M2
- Ribosomal protein L15
- Chain W2
- Ribosomal_L23eN domain-containing protein
- Chain i2
- Ribosomal protein L37
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