J3_8BPO_025
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGGUUG*CCUUC*GCACCGCACGUUCGUG
- Length
- 27 nucleotides
- Bulged bases
- 8BPO|1|A1|U|4882, 8BPO|1|A1|A|4938, 8BPO|1|A1|C|4940, 8BPO|1|A1|A|4943, 8BPO|1|A1|C|4944, 8BPO|1|A1|U|4950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|C|4749
8BPO|1|A1|G|4750
8BPO|1|A1|G|4751
8BPO|1|A1|U|4752
8BPO|1|A1|U|4753
8BPO|1|A1|G|4754
*
8BPO|1|A1|C|4879
8BPO|1|A1|C|4880
8BPO|1|A1|U|4881
8BPO|1|A1|U|4882
8BPO|1|A1|C|4883
*
8BPO|1|A1|G|4936
8BPO|1|A1|C|4937
8BPO|1|A1|A|4938
8BPO|1|A1|C|4939
8BPO|1|A1|C|4940
8BPO|1|A1|G|4941
8BPO|1|A1|C|4942
8BPO|1|A1|A|4943
8BPO|1|A1|C|4944
8BPO|1|A1|G|4945
8BPO|1|A1|U|4946
8BPO|1|A1|U|4947
8BPO|1|A1|C|4948
8BPO|1|A1|G|4949
8BPO|1|A1|U|4950
8BPO|1|A1|G|4951
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain E2
- 60S ribosomal protein L6
- Chain L2
- 60S ribosomal protein L14
- Chain N2
- 60S ribosomal protein L13a
- Chain e2
- 60S ribosomal protein L35a
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