J3_8BRM_001

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BRM_001 not in the Motif Atlas

Geometric match to J3_4WF9_010

Geometric discrepancy: 0.1003

The information below is about J3_4WF9_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

8BRM|1|LD|G|20
8BRM|1|LD|C|21
*
8BRM|1|Lt|G|321
8BRM|1|Lt|U|322
8BRM|1|Lt|G|323
8BRM|1|Lt|A|324
8BRM|1|Lt|A|325
8BRM|1|Lt|A|326
8BRM|1|Lt|A|327
8BRM|1|Lt|G|328
*
8BRM|1|Lt|C|353
8BRM|1|Lt|C|354

Current chains

Chain LD

5.8S rRNA

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LC

Ribosomal protein L4

Chain LG

Ribosomal protein L39

Chain LQ

Ribosomal protein L17

Chain LZ

Ribosomal protein L26