J3_8BRM_010

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGCGG*CGG*CCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|G|1222
8BRM|1|Lt|G|1223
8BRM|1|Lt|C|1224
8BRM|1|Lt|G|1225
8BRM|1|Lt|G|1226
*
8BRM|1|Lt|C|1235
8BRM|1|Lt|G|1236
8BRM|1|Lt|G|1237
*
8BRM|1|Lt|C|1253
8BRM|1|Lt|C|1254
8BRM|1|Lt|C|1255

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LD

5.8S rRNA

Chain LI

Ribosomal protein L7a

Chain LO

Ribosomal protein L15

Chain LY

Ribosomal protein L23A

Chain Lk

Ribosomal protein L37