J3_8BRM_011

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCCCG*CCCGC*GCGCCG

Length

16 nucleotides

Bulged bases

8BRM|1|Lt|C|1310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|C|1295
8BRM|1|Lt|C|1296
8BRM|1|Lt|C|1297
8BRM|1|Lt|C|1298
8BRM|1|Lt|G|1299
*
8BRM|1|Lt|C|1308
8BRM|1|Lt|C|1309
8BRM|1|Lt|C|1310
8BRM|1|Lt|G|1311
8BRM|1|Lt|C|1312
*
8BRM|1|Lt|G|1452
8BRM|1|Lt|C|1453
8BRM|1|Lt|G|1454
8BRM|1|Lt|C|1455
8BRM|1|Lt|C|1456
8BRM|1|Lt|G|1457

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain La

Ribosomal protein L27

Chain Lh

Ribosomal protein L34