J3_8BRM_018
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- ACCG*CGCCGGCCG*CGCCU
- Length
- 18 nucleotides
- Bulged bases
- 8BRM|1|St|C|688
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BRM_018 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.2225
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BRM|1|St|A|635
8BRM|1|St|C|636
8BRM|1|St|C|637
8BRM|1|St|G|638
*
8BRM|1|St|C|682
8BRM|1|St|G|683
8BRM|1|St|C|684
8BRM|1|St|C|685
8BRM|1|St|G|686
8BRM|1|St|G|687
8BRM|1|St|C|688
8BRM|1|St|C|689
8BRM|1|St|G|690
*
8BRM|1|St|C|697
8BRM|1|St|G|698
8BRM|1|St|C|699
8BRM|1|St|C|700
8BRM|1|St|U|701
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain LA
- Ribosomal protein L2
- Chain Lq
- Ribosomal protein L37a
- Chain SD
- Ribosomal protein S3a
- Chain SP
- Ribosomal protein S13
- Chain SQ
- Ribosomal protein S14
- Chain Sd
- Ribosomal protein S26
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