J3_8BRM_022

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCUCAAUCU*GCGCACCUCAC*GGCCGC

Length

26 nucleotides

Bulged bases

8BRM|1|St|C|943, 8BRM|1|St|G|944, 8BRM|1|St|A|946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|St|G|923
8BRM|1|St|C|924
8BRM|1|St|U|925
8BRM|1|St|C|926
8BRM|1|St|A|927
8BRM|1|St|A|928
8BRM|1|St|U|929
8BRM|1|St|C|930
8BRM|1|St|U|931
*
8BRM|1|St|G|942
8BRM|1|St|C|943
8BRM|1|St|G|944
8BRM|1|St|C|945
8BRM|1|St|A|946
8BRM|1|St|C|947
8BRM|1|St|C|948
8BRM|1|St|U|949
8BRM|1|St|C|950
8BRM|1|St|A|951
8BRM|1|St|C|952
*
8BRM|1|St|G|1160
8BRM|1|St|G|1161
8BRM|1|St|C|1162
8BRM|1|St|C|1163
8BRM|1|St|G|1164
8BRM|1|St|C|1165

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SR

Ribosomal protein S15

Chain SV

Ribosomal protein S18

Chain SX

Ribosomal protein S20

Chain Sh

Ribosomal protein S29A