J3_8BRM_031

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGCGAGGG*CCGCCCGAGAG*CGUACG

Length

25 nucleotides

Bulged bases

8BRM|1|Lt|G|177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|C|151
8BRM|1|Lt|G|152
8BRM|1|Lt|C|153
8BRM|1|Lt|G|154
8BRM|1|Lt|A|155
8BRM|1|Lt|G|156
8BRM|1|Lt|G|157
8BRM|1|Lt|G|158
*
8BRM|1|Lt|C|171
8BRM|1|Lt|C|172
8BRM|1|Lt|G|173
8BRM|1|Lt|C|174
8BRM|1|Lt|C|175
8BRM|1|Lt|C|176
8BRM|1|Lt|G|177
8BRM|1|Lt|A|178
8BRM|1|Lt|G|179
8BRM|1|Lt|A|180
8BRM|1|Lt|G|181
*
8BRM|1|Lt|C|193
8BRM|1|Lt|G|194
8BRM|1|Lt|U|195
8BRM|1|Lt|A|196
8BRM|1|Lt|C|197
8BRM|1|Lt|G|198

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LC

Ribosomal protein L4

Chain LD

5.8S rRNA

Chain LZ

Ribosomal protein L26