J3_8BRM_037

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGGC*GGACGGC*GAGGACGGCG

Length

21 nucleotides

Bulged bases

8BRM|1|St|C|1121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|St|C|1077
8BRM|1|St|G|1078
8BRM|1|St|G|1079
8BRM|1|St|C|1080
*
8BRM|1|St|G|1094
8BRM|1|St|G|1095
8BRM|1|St|A|1096
8BRM|1|St|C|1097
8BRM|1|St|G|1098
8BRM|1|St|G|1099
8BRM|1|St|C|1100
*
8BRM|1|St|G|1113
8BRM|1|St|A|1114
8BRM|1|St|G|1115
8BRM|1|St|G|1116
8BRM|1|St|A|1117
8BRM|1|St|C|1118
8BRM|1|St|G|1119
8BRM|1|St|G|1120
8BRM|1|St|C|1121
8BRM|1|St|G|1122

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SF

Ribosomal protein S5

Chain ST

Ribosomal protein S16

Chain SU

Ribosomal protein S17

Chain SX

Ribosomal protein S20

Chain Sg

Ribosomal protein S28

Chain Sh

Ribosomal protein S29A