J3_8BTK_001

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BTK_001 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.1944

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8BTK|1|A2|A|817
8BTK|1|A2|G|818
8BTK|1|A2|A|819
8BTK|1|A2|G|820
*
8BTK|1|A2|C|830
8BTK|1|A2|A|831
8BTK|1|A2|G|832
*
8BTK|1|A2|C|844
8BTK|1|A2|U|845
8BTK|1|A2|G|846
8BTK|1|A2|G|847
8BTK|1|A2|A|848
8BTK|1|A2|U|849

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ax

40S ribosomal protein S24