J3_8BTK_002

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUUC*GGACCAGAG*CAUU(PSU)G

Length

20 nucleotides

Bulged bases

8BTK|1|A2|G|992

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|A2|C|938
8BTK|1|A2|A|939
8BTK|1|A2|U|940
8BTK|1|A2|U|941
8BTK|1|A2|C|942
*
8BTK|1|A2|G|986
8BTK|1|A2|G|987
8BTK|1|A2|A|988
8BTK|1|A2|C|989
8BTK|1|A2|C|990
8BTK|1|A2|A|991
8BTK|1|A2|G|992
8BTK|1|A2|A|993
8BTK|1|A2|G|994
*
8BTK|1|A2|C|1001
8BTK|1|A2|A|1002
8BTK|1|A2|U|1003
8BTK|1|A2|U|1004
8BTK|1|A2|PSU|1005
8BTK|1|A2|G|1006

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

eS26

Chain Aa

40S ribosomal protein S3a

Chain Am

uS15

Chain An

40S ribosomal protein S14

Chain Bp

eL43