J3_8BTK_024

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AG*CGC(A2M)AAU*(A2M)GU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BTK_024 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1215

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BTK|1|A2|A|40
8BTK|1|A2|G|41
*
8BTK|1|A2|C|482
8BTK|1|A2|G|483
8BTK|1|A2|C|484
8BTK|1|A2|A2M|485
8BTK|1|A2|A|486
8BTK|1|A2|A|487
8BTK|1|A2|U|488
*
8BTK|1|A2|A2M|513
8BTK|1|A2|G|514
8BTK|1|A2|U|515

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Aw

40S ribosomal protein S23