J3_8BTK_025

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGAUCAAAACCAACCC*GGCGGCUUUG*CUAG

Length

31 nucleotides

Bulged bases

8BTK|1|A2|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|A2|C|223
8BTK|1|A2|A|224
8BTK|1|A2|G|225
8BTK|1|A2|A|226
8BTK|1|A2|U|227
8BTK|1|A2|C|228
8BTK|1|A2|A|229
8BTK|1|A2|A|230
8BTK|1|A2|A|231
8BTK|1|A2|A|232
8BTK|1|A2|C|233
8BTK|1|A2|C|234
8BTK|1|A2|A|235
8BTK|1|A2|A|236
8BTK|1|A2|C|237
8BTK|1|A2|C|238
8BTK|1|A2|C|239
*
8BTK|1|A2|G|280
8BTK|1|A2|G|281
8BTK|1|A2|C|282
8BTK|1|A2|G|283
8BTK|1|A2|G|284
8BTK|1|A2|C|285
8BTK|1|A2|U|286
8BTK|1|A2|U|287
8BTK|1|A2|U|288
8BTK|1|A2|G|289
*
8BTK|1|A2|C|296
8BTK|1|A2|U|297
8BTK|1|A2|A|298
8BTK|1|A2|G|299

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11