J3_8BTK_032
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- (OMC)UGGCAUGC*(OMG)AGGGACAAG*CCCGAGAUUG
- Length
- 29 nucleotides
- Bulged bases
- 8BTK|1|A2|U|1398, 8BTK|1|A2|A|1455, 8BTK|1|A2|U|1478
- QA status
- Modified nucleotides: OMC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BTK|1|A2|OMC|1392
8BTK|1|A2|U|1393
8BTK|1|A2|G|1394
8BTK|1|A2|G|1395
8BTK|1|A2|C|1396
8BTK|1|A2|A|1397
8BTK|1|A2|U|1398
8BTK|1|A2|G|1399
8BTK|1|A2|C|1400
*
8BTK|1|A2|OMG|1448
8BTK|1|A2|A|1449
8BTK|1|A2|G|1450
8BTK|1|A2|G|1451
8BTK|1|A2|G|1452
8BTK|1|A2|A|1453
8BTK|1|A2|C|1454
8BTK|1|A2|A|1455
8BTK|1|A2|A|1456
8BTK|1|A2|G|1457
*
8BTK|1|A2|C|1471
8BTK|1|A2|C|1472
8BTK|1|A2|C|1473
8BTK|1|A2|G|1474
8BTK|1|A2|A|1475
8BTK|1|A2|G|1476
8BTK|1|A2|A|1477
8BTK|1|A2|U|1478
8BTK|1|A2|U|1479
8BTK|1|A2|G|1480
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AF
- RACK1
- Chain AG
- uS14
- Chain Ac
- 40S ribosomal protein S3
- Chain Ae
- Ribosomal protein S5
- Chain Ap
- uS9
- Chain Aq
- 40S ribosomal protein eS17
- Chain At
- 40S ribosomal protein uS10
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