J3_8BTK_036

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|B5|C|451
8BTK|1|B5|A|452
8BTK|1|B5|G|453
8BTK|1|B5|U|454
8BTK|1|B5|C|455
*
8BTK|1|B5|G|695
8BTK|1|B5|U|696
8BTK|1|B5|G|697
8BTK|1|B5|C|698
8BTK|1|B5|G|699
*
8BTK|1|B5|C|1236
8BTK|1|B5|G|1237
8BTK|1|B5|A|1238
8BTK|1|B5|U|1239
8BTK|1|B5|G|1240

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain Be

eL32

Chain Bf

60S ribosomal protein L35a

Chain Br

60S ribosomal protein L28