J3_8BUU_003

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

8BUU|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BUU_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1481

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8BUU|1|A|C|272
8BUU|1|A|A|273
8BUU|1|A|A|274
8BUU|1|A|A|275
8BUU|1|A|C|276
*
8BUU|1|A|G|295
8BUU|1|A|G|296
8BUU|1|A|G|297
8BUU|1|A|U|298
8BUU|1|A|U|299
8BUU|1|A|G|300
8BUU|1|A|U|301
8BUU|1|A|A|302
*
8BUU|1|A|U|416
8BUU|1|A|G|417

Current chains

Chain A

23S rRNA

Nearby chains