J3_8BYV_017

3D structure

PDB id

8BYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BYV_017 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2296

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8BYV|1|a|C|1000
8BYV|1|a|U|1001
8BYV|1|a|U|1002
8BYV|1|a|G|1003
8BYV|1|a|A|1004
8BYV|1|a|C|1005
8BYV|1|a|A|1006
8BYV|1|a|U|1007
*
8BYV|1|a|A|1056
8BYV|1|a|C|1057
8BYV|1|a|A|1058
8BYV|1|a|G|1059
*
8BYV|1|a|C|1221
8BYV|1|a|U|1222
8BYV|1|a|U|1223
8BYV|1|a|A|1224
8BYV|1|a|U|1225
8BYV|1|a|G|1226

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z