J3_8BYV_021
3D structure
- PDB id
- 8BYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BYV_021 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.2574
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.2
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BYV|1|a|C|946
8BYV|1|a|A|947
8BYV|1|a|A|948
8BYV|1|a|G|949
*
8BYV|1|a|C|1355
8BYV|1|a|U|1356
8BYV|1|a|A|1357
8BYV|1|a|G|1358
8BYV|1|a|U|1359
8BYV|1|a|A|1360
8BYV|1|a|A|1361
*
8BYV|1|a|U|1383
8BYV|1|a|G|1384
8BYV|1|a|A|1385
8BYV|1|a|A|1386
8BYV|1|a|U|1387
8BYV|1|a|A|1388
8BYV|1|a|C|1389
8BYV|1|a|G|1390
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
Coloring options: