J3_8C83_005

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8C83|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C83|1|2|A|213
8C83|1|2|G|214
8C83|1|2|A|215
8C83|1|2|U|216
8C83|1|2|A|217
8C83|1|2|A|218
8C83|1|2|A|219
8C83|1|2|A|220
8C83|1|2|A|221
8C83|1|2|A|222
8C83|1|2|U|223
8C83|1|2|C|224
8C83|1|2|A|225
8C83|1|2|A|226
8C83|1|2|U|227
8C83|1|2|G|228
*
8C83|1|2|C|237
8C83|1|2|U|238
8C83|1|2|C|239
8C83|1|2|U|240
8C83|1|2|U|241
8C83|1|2|U|242
8C83|1|2|G|243
*
8C83|1|2|C|250
8C83|1|2|A|251
8C83|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A