J3_8C8X_002

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8C8X|1|A|U|686, 8C8X|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C8X_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.17

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8C8X|1|A|U|683
8C8X|1|A|G|684
8C8X|1|A|A|685
8C8X|1|A|U|686
8C8X|1|A|C|687
8C8X|1|A|U|688
8C8X|1|A|A|689
*
8C8X|1|A|U|773
8C8X|1|A|G|774
8C8X|1|A|G|775
*
8C8X|1|A|C|791
8C8X|1|A|A|792
8C8X|1|A|A|793
8C8X|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2