J3_8C8Y_015

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGCAUAAGCCAGCUUGAC*GGU*AGGUC

Length

26 nucleotides

Bulged bases

8C8Y|1|A|U|2334, 8C8Y|1|A|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C8Y|1|A|G|2330
8C8Y|1|A|G|2331
8C8Y|1|A|C|2332
8C8Y|1|A|A|2333
8C8Y|1|A|U|2334
8C8Y|1|A|A|2335
8C8Y|1|A|A|2336
8C8Y|1|A|G|2337
8C8Y|1|A|C|2338
8C8Y|1|A|C|2339
8C8Y|1|A|A|2340
8C8Y|1|A|G|2341
8C8Y|1|A|C|2342
8C8Y|1|A|U|2343
8C8Y|1|A|U|2344
8C8Y|1|A|G|2345
8C8Y|1|A|A|2346
8C8Y|1|A|C|2347
*
8C8Y|1|A|G|2370
8C8Y|1|A|G|2371
8C8Y|1|A|U|2372
*
8C8Y|1|A|A|2381
8C8Y|1|A|G|2382
8C8Y|1|A|G|2383
8C8Y|1|A|U|2384
8C8Y|1|A|C|2385

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27