J3_8C90_011

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8C90|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C90_011 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0776

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8C90|1|A|G|297
8C90|1|A|G|298
8C90|1|A|A|299
8C90|1|A|A|300
8C90|1|A|G|301
*
8C90|1|A|C|316
8C90|1|A|G|317
8C90|1|A|C|318
8C90|1|A|G|319
8C90|1|A|A|320
8C90|1|A|U|321
8C90|1|A|A|322
8C90|1|A|C|323
8C90|1|A|A|324
8C90|1|A|G|325
*
8C90|1|A|C|337
8C90|1|A|G|338
8C90|1|A|U|339
8C90|1|A|A|340
8C90|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24