J3_8CA7_005

3D structure

PDB id

8CA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Omadacycline and spectinomycin bound to the 30S ribosomal subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GAAG*UGUGC*GAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CA7|1|A|G|1003
8CA7|1|A|A|1004
8CA7|1|A|A|1005
8CA7|1|A|G|1006
*
8CA7|1|A|U|1023
8CA7|1|A|G|1024
8CA7|1|A|U|1025
8CA7|1|A|G|1026
8CA7|1|A|C|1027
*
8CA7|1|A|G|1034
8CA7|1|A|A|1035
8CA7|1|A|A|1036
8CA7|1|A|C|1037

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain N

Small ribosomal subunit protein uS14