3D structure

PDB id
8CA7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Omadacycline and spectinomycin bound to the 30S ribosomal subunit head
Experimental method
ELECTRON MICROSCOPY
Resolution
2.06 Å

Loop

Sequence
UAU*AGAC*GGUG
Length
11 nucleotides
Bulged bases
8CA7|1|A|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CA7_007 not in the Motif Atlas
Homologous match to J3_5J7L_010
Geometric discrepancy: 0.0872
The information below is about J3_5J7L_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82365.4
Basepair signature
cWW-F-cWW-cWW-F-F
Number of instances in this motif group
4

Unit IDs

8CA7|1|A|U|1116
8CA7|1|A|A|1117
8CA7|1|A|U|1118
*
8CA7|1|A|A|1155
8CA7|1|A|G|1156
8CA7|1|A|A|1157
8CA7|1|A|C|1158
*
8CA7|1|A|G|1181
8CA7|1|A|G|1182
8CA7|1|A|U|1183
8CA7|1|A|G|1184

Current chains

Chain A
16S rRNA

Nearby chains

Chain I
Small ribosomal subunit protein uS9
Chain J
Small ribosomal subunit protein uS10
Chain N
Small ribosomal subunit protein uS14

Coloring options:


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