J3_8CA7_011

3D structure

PDB id

8CA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Omadacycline and spectinomycin bound to the 30S ribosomal subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

UAU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

8CA7|1|A|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CA7_011 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.0937

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CA7|1|A|U|1116
8CA7|1|A|A|1117
8CA7|1|A|U|1118
*
8CA7|1|A|A|1155
8CA7|1|A|G|1156
8CA7|1|A|A|1157
8CA7|1|A|C|1158
8CA7|1|A|U|1159
8CA7|1|A|G|1160
8CA7|1|A|C|1161
*
8CA7|1|A|G|1175
8CA7|1|A|A|1176
8CA7|1|A|G|1177
8CA7|1|A|G|1178
8CA7|1|A|A|1179
8CA7|1|A|A|1180
8CA7|1|A|G|1181
8CA7|1|A|G|1182
8CA7|1|A|U|1183
8CA7|1|A|G|1184

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14