J3_8CAH_008
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CAH_008 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.4433
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8CAH|1|2|U|1283
8CAH|1|2|C|1284
8CAH|1|2|U|1285
8CAH|1|2|U|1286
8CAH|1|2|A|1287
8CAH|1|2|G|1288
*
8CAH|1|2|C|1327
8CAH|1|2|G|1328
8CAH|1|2|A|1329
8CAH|1|2|G|1330
8CAH|1|2|A|1331
8CAH|1|2|C|1332
*
8CAH|1|2|G|1419
8CAH|1|2|C|1420
8CAH|1|2|A|1421
8CAH|1|2|A|1422
8CAH|1|2|U|1423
8CAH|1|2|A|1424
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain F
- 40S ribosomal protein S16-A
- Chain H
- 40S ribosomal protein S17-A
- Chain K
- 40S ribosomal protein S20
- Chain M
- RPS29A isoform 1
- Chain R
- 40S ribosomal protein S2
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