J3_8CAH_013

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8CAH|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CAH|1|2|A|213
8CAH|1|2|G|214
8CAH|1|2|A|215
8CAH|1|2|U|216
8CAH|1|2|A|217
8CAH|1|2|A|218
8CAH|1|2|A|219
8CAH|1|2|A|220
8CAH|1|2|A|221
8CAH|1|2|A|222
8CAH|1|2|U|223
8CAH|1|2|C|224
8CAH|1|2|A|225
8CAH|1|2|A|226
8CAH|1|2|U|227
8CAH|1|2|G|228
*
8CAH|1|2|C|237
8CAH|1|2|U|238
8CAH|1|2|C|239
8CAH|1|2|U|240
8CAH|1|2|U|241
8CAH|1|2|U|242
8CAH|1|2|G|243
*
8CAH|1|2|C|250
8CAH|1|2|A|251
8CAH|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-B

Chain T

40S ribosomal protein S6-B

Chain X

40S ribosomal protein S11-A