J3_8CAS_002

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

8CAS|1|2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CAS_002 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.0758

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

8CAS|1|2|A|881
8CAS|1|2|U|882
8CAS|1|2|C|883
8CAS|1|2|A|884
*
8CAS|1|2|U|928
8CAS|1|2|A|929
8CAS|1|2|A|930
8CAS|1|2|C|931
8CAS|1|2|U|932
8CAS|1|2|A|933
8CAS|1|2|C|934
8CAS|1|2|U|935
8CAS|1|2|G|936
*
8CAS|1|2|C|943
8CAS|1|2|A|944
8CAS|1|2|U|945
8CAS|1|2|U|946
8CAS|1|2|U|947

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-A

Chain e

40S ribosomal protein S26-A