J3_8CAS_006
3D structure
- PDB id
- 8CAS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8CAS|1|2|G|1199, 8CAS|1|2|G|1201, 8CAS|1|2|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CAS_006 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1267
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CAS|1|2|C|1180
8CAS|1|2|U|1181
8CAS|1|2|U|1182
8CAS|1|2|A|1183
8CAS|1|2|A|1184
8CAS|1|2|U|1185
8CAS|1|2|U|1186
8CAS|1|2|U|1187
*
8CAS|1|2|G|1198
8CAS|1|2|G|1199
8CAS|1|2|G|1200
8CAS|1|2|G|1201
8CAS|1|2|A|1202
8CAS|1|2|A|1203
8CAS|1|2|A|1204
8CAS|1|2|C|1205
8CAS|1|2|U|1206
8CAS|1|2|C|1207
8CAS|1|2|A|1208
8CAS|1|2|C|1209
*
8CAS|1|2|G|1454
8CAS|1|2|G|1455
8CAS|1|2|C|1456
8CAS|1|2|C|1457
8CAS|1|2|G|1458
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 4C
- Chain E
- RPS15 isoform 1
- Chain J
- 40S ribosomal protein S18-A
- Chain L
- 40S ribosomal protein S20
- Chain N
- RPS29A isoform 1
- Chain O
- 40S ribosomal protein S31
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