J3_8CAS_013

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8CAS|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CAS|1|2|A|213
8CAS|1|2|G|214
8CAS|1|2|A|215
8CAS|1|2|U|216
8CAS|1|2|A|217
8CAS|1|2|A|218
8CAS|1|2|A|219
8CAS|1|2|A|220
8CAS|1|2|A|221
8CAS|1|2|A|222
8CAS|1|2|U|223
8CAS|1|2|C|224
8CAS|1|2|A|225
8CAS|1|2|A|226
8CAS|1|2|U|227
8CAS|1|2|G|228
*
8CAS|1|2|C|237
8CAS|1|2|U|238
8CAS|1|2|C|239
8CAS|1|2|U|240
8CAS|1|2|U|241
8CAS|1|2|U|242
8CAS|1|2|G|243
*
8CAS|1|2|C|250
8CAS|1|2|A|251
8CAS|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-B

Chain T

40S ribosomal protein S6-B