J3_8CAZ_008

3D structure

PDB id

8CAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

empty 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8CAZ|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CAZ_008 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1319

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8CAZ|1|A|C|990
8CAZ|1|A|U|991
8CAZ|1|A|U|992
8CAZ|1|A|G|993
8CAZ|1|A|A|994
8CAZ|1|A|C|995
8CAZ|1|A|A|996
8CAZ|1|A|U|997
*
8CAZ|1|A|A|1044
8CAZ|1|A|C|1045
8CAZ|1|A|A|1046
8CAZ|1|A|G|1047
*
8CAZ|1|A|C|1210
8CAZ|1|A|U|1211
8CAZ|1|A|U|1212
8CAZ|1|A|A|1213
8CAZ|1|A|C|1214
8CAZ|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14