J3_8CBJ_006
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8CBJ|1|2|G|1199, 8CBJ|1|2|A|1203
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CBJ_006 not in the Motif Atlas
- Geometric match to J3_8C3A_040
- Geometric discrepancy: 0.3486
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CBJ|1|2|C|1180
8CBJ|1|2|U|1181
8CBJ|1|2|U|1182
8CBJ|1|2|A|1183
8CBJ|1|2|A|1184
8CBJ|1|2|U|1185
8CBJ|1|2|U|1186
8CBJ|1|2|U|1187
*
8CBJ|1|2|G|1198
8CBJ|1|2|G|1199
8CBJ|1|2|G|1200
8CBJ|1|2|G|1201
8CBJ|1|2|A|1202
8CBJ|1|2|A|1203
8CBJ|1|2|A|1204
8CBJ|1|2|C|1205
8CBJ|1|2|U|1206
8CBJ|1|2|C|1207
8CBJ|1|2|A|1208
8CBJ|1|2|C|1209
*
8CBJ|1|2|G|1454
8CBJ|1|2|G|1455
8CBJ|1|2|C|1456
8CBJ|1|2|C|1457
8CBJ|1|2|G|1458
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain P
- RPS15 isoform 1
- Chain S
- 40S ribosomal protein S18-A
- Chain U
- 40S ribosomal protein S20
- Chain d
- RPS29A isoform 1
- Chain k
- TSR1 isoform 1
- Chain l
- non-specific serine/threonine protein kinase
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