J3_8CBJ_007

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAGAC*GGGUGG*UUAGACG

Length

19 nucleotides

Bulged bases

8CBJ|1|2|G|1445, 8CBJ|1|2|C|1447

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CBJ|1|2|C|1215
8CBJ|1|2|C|1216
8CBJ|1|2|A|1217
8CBJ|1|2|G|1218
8CBJ|1|2|A|1219
8CBJ|1|2|C|1220
*
8CBJ|1|2|G|1263
8CBJ|1|2|G|1264
8CBJ|1|2|G|1265
8CBJ|1|2|U|1266
8CBJ|1|2|G|1267
8CBJ|1|2|G|1268
*
8CBJ|1|2|U|1442
8CBJ|1|2|U|1443
8CBJ|1|2|A|1444
8CBJ|1|2|G|1445
8CBJ|1|2|A|1446
8CBJ|1|2|C|1447
8CBJ|1|2|G|1448

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain i

ENP1 isoform 1

Chain k

TSR1 isoform 1