J3_8CBJ_008

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

8CBJ|1|2|U|1285, 8CBJ|1|2|A|1287

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CBJ|1|2|U|1283
8CBJ|1|2|C|1284
8CBJ|1|2|U|1285
8CBJ|1|2|U|1286
8CBJ|1|2|A|1287
8CBJ|1|2|G|1288
*
8CBJ|1|2|C|1327
8CBJ|1|2|G|1328
8CBJ|1|2|A|1329
8CBJ|1|2|G|1330
8CBJ|1|2|A|1331
8CBJ|1|2|C|1332
*
8CBJ|1|2|G|1419
8CBJ|1|2|C|1420
8CBJ|1|2|A|1421
8CBJ|1|2|A|1422
8CBJ|1|2|U|1423
8CBJ|1|2|A|1424

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain Q

40S ribosomal protein S16-A

Chain R

40S ribosomal protein S17-A

Chain U

40S ribosomal protein S20

Chain d

RPS29A isoform 1