J3_8CBJ_020
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAAC*GGACUA*UGGAAGUUUG
- Length
- 20 nucleotides
- Bulged bases
- 8CBJ|1|2|U|1390, 8CBJ|1|2|U|1413, 8CBJ|1|2|U|1414
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CBJ_020 not in the Motif Atlas
- Homologous match to J3_8CRE_085
- Geometric discrepancy: 0.5677
- The information below is about J3_8CRE_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88233.1
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8CBJ|1|2|U|1335
8CBJ|1|2|A|1336
8CBJ|1|2|A|1337
8CBJ|1|2|C|1338
*
8CBJ|1|2|G|1386
8CBJ|1|2|G|1387
8CBJ|1|2|A|1388
8CBJ|1|2|C|1389
8CBJ|1|2|U|1390
8CBJ|1|2|A|1391
*
8CBJ|1|2|U|1407
8CBJ|1|2|G|1408
8CBJ|1|2|G|1409
8CBJ|1|2|A|1410
8CBJ|1|2|A|1411
8CBJ|1|2|G|1412
8CBJ|1|2|U|1413
8CBJ|1|2|U|1414
8CBJ|1|2|U|1415
8CBJ|1|2|G|1416
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain Q
- 40S ribosomal protein S16-A
- Chain R
- 40S ribosomal protein S17-A
- Chain U
- 40S ribosomal protein S20
- Chain d
- RPS29A isoform 1
- Chain g
- Guanine nucleotide-binding protein subunit beta-like protein
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