J3_8CDL_009

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUC*GCCUAUCGAUCCU*A(OMG)GUGCC

Length

23 nucleotides

Bulged bases

8CDL|1|AA|C|2797

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|AA|G|2651
8CDL|1|AA|U|2652
8CDL|1|AA|C|2653
*
8CDL|1|AA|G|2754
8CDL|1|AA|C|2755
8CDL|1|AA|C|2756
8CDL|1|AA|U|2757
8CDL|1|AA|A|2758
8CDL|1|AA|U|2759
8CDL|1|AA|C|2760
8CDL|1|AA|G|2761
8CDL|1|AA|A|2762
8CDL|1|AA|U|2763
8CDL|1|AA|C|2764
8CDL|1|AA|C|2765
8CDL|1|AA|U|2766
*
8CDL|1|AA|A|2792
8CDL|1|AA|OMG|2793
8CDL|1|AA|G|2794
8CDL|1|AA|U|2795
8CDL|1|AA|G|2796
8CDL|1|AA|C|2797
8CDL|1|AA|C|2798

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain Cc

Transfer RNA; tRNA

Chain F

60S ribosomal protein L21-A

Chain M

60S ribosomal protein L28

Chain a

60S ribosomal protein L42-A