J3_8CDL_012

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CDL_012 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.1272

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

8CDL|1|AA|C|3298
8CDL|1|AA|A|3299
8CDL|1|AA|U|3300
*
8CDL|1|AA|A|3314
8CDL|1|AA|G|3315
8CDL|1|AA|A|3316
8CDL|1|AA|U|3317
8CDL|1|AA|G|3318
*
8CDL|1|AA|C|3388
8CDL|1|AA|U|3389
8CDL|1|AA|G|3390

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain FF

60S ribosomal protein L3

Chain P

60S ribosomal protein L31-A