J3_8CDR_014
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8CDR|1|c|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDR_014 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0748
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8CDR|1|c|A|881
8CDR|1|c|U|882
8CDR|1|c|C|883
8CDR|1|c|A|884
*
8CDR|1|c|U|928
8CDR|1|c|A|929
8CDR|1|c|A|930
8CDR|1|c|C|931
8CDR|1|c|U|932
8CDR|1|c|A|933
8CDR|1|c|C|934
8CDR|1|c|U|935
8CDR|1|c|G|936
*
8CDR|1|c|C|943
8CDR|1|c|A|944
8CDR|1|c|U|945
8CDR|1|c|U|946
8CDR|1|c|U|947
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain b
- 60S ribosomal protein L43-A
- Chain e
- 40S ribosomal protein S1-A
- Chain p
- 40S ribosomal protein S13
- Chain q
- 40S ribosomal protein S14-A
Coloring options: