J3_8CDR_036
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 8CDR|1|AA|A|3172, 8CDR|1|AA|G|3173, 8CDR|1|AA|A|3215, 8CDR|1|AA|G|3216, 8CDR|1|AA|G|3219, 8CDR|1|AA|A|3268, 8CDR|1|AA|U|3270, 8CDR|1|AA|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDR_036 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.2273
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8CDR|1|AA|U|3171
8CDR|1|AA|A|3172
8CDR|1|AA|G|3173
8CDR|1|AA|A|3174
8CDR|1|AA|U|3175
8CDR|1|AA|G|3176
*
8CDR|1|AA|C|3212
8CDR|1|AA|A|3213
8CDR|1|AA|U|3214
8CDR|1|AA|A|3215
8CDR|1|AA|G|3216
8CDR|1|AA|C|3217
8CDR|1|AA|A|3218
8CDR|1|AA|G|3219
8CDR|1|AA|G|3220
*
8CDR|1|AA|C|3265
8CDR|1|AA|G|3266
8CDR|1|AA|A|3267
8CDR|1|AA|A|3268
8CDR|1|AA|U|3269
8CDR|1|AA|U|3270
8CDR|1|AA|G|3271
8CDR|1|AA|C|3272
8CDR|1|AA|A|3273
8CDR|1|AA|A|3274
8CDR|1|AA|U|3275
8CDR|1|AA|G|3276
8CDR|1|AA|U|3277
8CDR|1|AA|C|3278
8CDR|1|AA|A|3279
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain II
- 60S ribosomal protein L6-A
- Chain PP
- 60S ribosomal protein L14-A
- Chain R
- 60S ribosomal protein L33-A
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