J3_8CDU_004
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GCGAAGAACCUUAC*GGCUA
- Length
- 27 nucleotides
- Bulged bases
- 8CDU|1|A|C|982, 8CDU|1|A|A|985, 8CDU|1|A|G|986, 8CDU|1|A|A|988
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDU_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.122
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8CDU|1|A|U|965
8CDU|1|A|U|966
8CDU|1|A|U|967
8CDU|1|A|A|968
8CDU|1|A|A|969
8CDU|1|A|U|970
8CDU|1|A|U|971
8CDU|1|A|C|972
*
8CDU|1|A|G|981
8CDU|1|A|C|982
8CDU|1|A|G|983
8CDU|1|A|A|984
8CDU|1|A|A|985
8CDU|1|A|G|986
8CDU|1|A|A|987
8CDU|1|A|A|988
8CDU|1|A|C|989
8CDU|1|A|C|990
8CDU|1|A|U|991
8CDU|1|A|U|992
8CDU|1|A|A|993
8CDU|1|A|C|994
*
8CDU|1|A|G|1230
8CDU|1|A|G|1231
8CDU|1|A|C|1232
8CDU|1|A|U|1233
8CDU|1|A|A|1234
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
- Chain R
- 30S ribosomal protein S19
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