J3_8CDU_011
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCACAAG*CUAGUAA*UGAAUACGUUCCC
- Length
- 27 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CDU|1|A|G|943
8CDU|1|A|C|944
8CDU|1|A|A|945
8CDU|1|A|C|946
8CDU|1|A|A|947
8CDU|1|A|A|948
8CDU|1|A|G|949
*
8CDU|1|A|C|1353
8CDU|1|A|U|1354
8CDU|1|A|A|1355
8CDU|1|A|G|1356
8CDU|1|A|U|1357
8CDU|1|A|A|1358
8CDU|1|A|A|1359
*
8CDU|1|A|U|1381
8CDU|1|A|G|1382
8CDU|1|A|A|1383
8CDU|1|A|A|1384
8CDU|1|A|U|1385
8CDU|1|A|A|1386
8CDU|1|A|C|1387
8CDU|1|A|G|1388
8CDU|1|A|U|1389
8CDU|1|A|U|1390
8CDU|1|A|C|1391
8CDU|1|A|C|1392
8CDU|1|A|C|1393
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- Ribonuclease R
- Chain H
- 30S ribosomal protein S7
- Chain J
- 30S ribosomal protein S9
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