J3_8CDU_012

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

8CDU|1|A|U|1223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CDU_012 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2692

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8CDU|1|A|C|1000
8CDU|1|A|U|1001
8CDU|1|A|U|1002
8CDU|1|A|G|1003
8CDU|1|A|A|1004
8CDU|1|A|C|1005
8CDU|1|A|A|1006
8CDU|1|A|U|1007
*
8CDU|1|A|A|1054
8CDU|1|A|C|1055
8CDU|1|A|A|1056
8CDU|1|A|G|1057
*
8CDU|1|A|C|1219
8CDU|1|A|U|1220
8CDU|1|A|U|1221
8CDU|1|A|A|1222
8CDU|1|A|U|1223
8CDU|1|A|G|1224

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14