J3_8CDU_017

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGACAAUCC*GGACGUCC*GGCAG

Length

23 nucleotides

Bulged bases

8CDU|1|A|C|1035

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDU|1|A|C|1011
8CDU|1|A|U|1012
8CDU|1|A|G|1013
8CDU|1|A|A|1014
8CDU|1|A|C|1015
8CDU|1|A|A|1016
8CDU|1|A|A|1017
8CDU|1|A|U|1018
8CDU|1|A|C|1019
8CDU|1|A|C|1020
*
8CDU|1|A|G|1029
8CDU|1|A|G|1030
8CDU|1|A|A|1031
8CDU|1|A|C|1032
8CDU|1|A|G|1033
8CDU|1|A|U|1034
8CDU|1|A|C|1035
8CDU|1|A|C|1036
*
8CDU|1|A|G|1045
8CDU|1|A|G|1046
8CDU|1|A|C|1047
8CDU|1|A|A|1048
8CDU|1|A|G|1049

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S3

Chain N

30S ribosomal protein S14