J3_8CEH_009

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

GUC*GCCUAUCGAUCCU*A(OMG)GUGCC

Length

23 nucleotides

Bulged bases

8CEH|1|AA|C|2797

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CEH|1|AA|G|2651
8CEH|1|AA|U|2652
8CEH|1|AA|C|2653
*
8CEH|1|AA|G|2754
8CEH|1|AA|C|2755
8CEH|1|AA|C|2756
8CEH|1|AA|U|2757
8CEH|1|AA|A|2758
8CEH|1|AA|U|2759
8CEH|1|AA|C|2760
8CEH|1|AA|G|2761
8CEH|1|AA|A|2762
8CEH|1|AA|U|2763
8CEH|1|AA|C|2764
8CEH|1|AA|C|2765
8CEH|1|AA|U|2766
*
8CEH|1|AA|A|2792
8CEH|1|AA|OMG|2793
8CEH|1|AA|G|2794
8CEH|1|AA|U|2795
8CEH|1|AA|G|2796
8CEH|1|AA|C|2797
8CEH|1|AA|C|2798

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain Cc

Transfer RNA; tRNA

Chain F

60S ribosomal protein L21-A

Chain M

60S ribosomal protein L28

Chain a

60S ribosomal protein L42-A