J3_8CEH_031

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

AGAUGG*CGUUUCAAAGG*CACCAU

Length

23 nucleotides

Bulged bases

8CEH|1|AA|C|1556, 8CEH|1|AA|A|1558, 8CEH|1|AA|A|1580, 8CEH|1|AA|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CEH_031 not in the Motif Atlas

Homologous match to J3_9PN5_015

Geometric discrepancy: 0.2182

The information below is about J3_9PN5_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_53783.2

Basepair signature

cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F

Number of instances in this motif group

3

Unit IDs

8CEH|1|AA|A|1537
8CEH|1|AA|G|1538
8CEH|1|AA|A|1539
8CEH|1|AA|U|1540
8CEH|1|AA|G|1541
8CEH|1|AA|G|1542
*
8CEH|1|AA|C|1551
8CEH|1|AA|G|1552
8CEH|1|AA|U|1553
8CEH|1|AA|U|1554
8CEH|1|AA|U|1555
8CEH|1|AA|C|1556
8CEH|1|AA|A|1557
8CEH|1|AA|A|1558
8CEH|1|AA|A|1559
8CEH|1|AA|G|1560
8CEH|1|AA|G|1561
*
8CEH|1|AA|C|1579
8CEH|1|AA|A|1580
8CEH|1|AA|C|1581
8CEH|1|AA|C|1582
8CEH|1|AA|A|1583
8CEH|1|AA|U|1584

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain EE

60S ribosomal protein L2-A

Chain J

60S ribosomal protein L25

Chain KK

60S ribosomal protein L8-A

Chain QQ

60S ribosomal protein L15-A

Chain V

60S ribosomal protein L37-A