3D structure

PDB id
8CEU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Retapamulin and Capreomycin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.83 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
8CEU|1|a|U|686, 8CEU|1|a|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CEU_001 not in the Motif Atlas
Homologous match to J3_5J7L_038
Geometric discrepancy: 0.0559
The information below is about J3_5J7L_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

8CEU|1|a|U|683
8CEU|1|a|G|684
8CEU|1|a|A|685
8CEU|1|a|U|686
8CEU|1|a|C|687
8CEU|1|a|U|688
8CEU|1|a|A|689
*
8CEU|1|a|U|773
8CEU|1|a|G|774
8CEU|1|a|G|775
*
8CEU|1|a|C|791
8CEU|1|a|A|792
8CEU|1|a|A|793
8CEU|1|a|A|794

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain c
Large ribosomal subunit protein uL2

Coloring options:


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