J3_8CEU_002

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CEU_002 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0482

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8CEU|1|a|C|698
8CEU|1|a|A|699
8CEU|1|a|G|700
*
8CEU|1|a|C|732
8CEU|1|a|G|733
8CEU|1|a|A|734
8CEU|1|a|A|735
8CEU|1|a|C|736
*
8CEU|1|a|G|760
8CEU|1|a|A|761
8CEU|1|a|U|762
8CEU|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain G

Capreomycin IA

Chain c

Large ribosomal subunit protein uL2