J3_8CEU_014

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8CEU|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CEU_014 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0369

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8CEU|1|a|G|297
8CEU|1|a|G|298
8CEU|1|a|A|299
8CEU|1|a|A|300
8CEU|1|a|G|301
*
8CEU|1|a|C|316
8CEU|1|a|G|317
8CEU|1|a|C|318
8CEU|1|a|G|319
8CEU|1|a|A|320
8CEU|1|a|U|321
8CEU|1|a|A|322
8CEU|1|a|C|323
8CEU|1|a|A|324
8CEU|1|a|G|325
*
8CEU|1|a|C|337
8CEU|1|a|G|338
8CEU|1|a|U|339
8CEU|1|a|A|340
8CEU|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24