3D structure

PDB id
8CEU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Retapamulin and Capreomycin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.83 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
8CEU|1|a|A|2388, 8CEU|1|a|U|2390, 8CEU|1|a|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CEU_017 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0689
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8CEU|1|a|G|2282
8CEU|1|a|C|2283
8CEU|1|a|A|2284
*
8CEU|1|a|U|2384
8CEU|1|a|C|2385
8CEU|1|a|A|2386
8CEU|1|a|U|2387
8CEU|1|a|A|2388
8CEU|1|a|G|2389
8CEU|1|a|U|2390
8CEU|1|a|G|2391
8CEU|1|a|A|2392
8CEU|1|a|U|2393
8CEU|1|a|C|2394
8CEU|1|a|C|2395
*
8CEU|1|a|G|2421
8CEU|1|a|C|2422
8CEU|1|a|U|2423
8CEU|1|a|C|2424
8CEU|1|a|A|2425
8CEU|1|a|A|2426
8CEU|1|a|C|2427

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
Large ribosomal subunit protein bL33
Chain 2
Large ribosomal subunit protein bL35
Chain k
50S ribosomal protein L15
Chain v
Large ribosomal subunit protein bL27

Coloring options:


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