J3_8CF1_001

3D structure

PDB id

8CF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline bound to the 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CF1_001 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0544

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8CF1|1|A|C|936
8CF1|1|A|A|937
8CF1|1|A|A|938
8CF1|1|A|G|939
*
8CF1|1|A|C|1344
8CF1|1|A|U|1345
8CF1|1|A|A|1346
8CF1|1|A|G|1347
8CF1|1|A|U|1348
8CF1|1|A|A|1349
8CF1|1|A|A|1350
*
8CF1|1|A|U|1372
8CF1|1|A|G|1373
8CF1|1|A|A|1374
8CF1|1|A|A|1375
8CF1|1|A|U|1376
8CF1|1|A|A|1377
8CF1|1|A|C|1378
8CF1|1|A|G|1379

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

Small ribosomal subunit protein uS9